@SamuriHL,
I've done a bit of testing over the past couple of hours. This was all done using my back-up BH16NS55. Drive was originally flashed using dosflash a bit over a year ago to ASUS 3.01,then upgraded to 3.02 via the official ASUS 3.02 flasher. It has been this way ever since, until today.
TEST 1:
1. Converted a blu-ray (from iso) to DVD and was successfully written to a blank DVD-R disc.
2. Used ImgBurn to write blu-ray iso to blank (BD-RE) blu-ray disc. Also a success.
I then used dosflash to restore my original LG 1.03 firmware back to the drive. I then used my modified ASUS FW Changer to downgrade from stock LG 1.03 to ASUS 3.02.
TEST 2:
1. Converted a blu-ray (from iso) to DVD and was successfully written to a blank DVD-R disc.
2. Used ImgBurn to write blu-ray iso to blank (BD-RE) blu-ray disc. Also a success.
As you previously mentioned, there are some differences between the dosflash/eeprom generated firmware vs the (safe) modified flasher firmware. I did some comparisons and noted that:
From 1D0000 - 1D360F
dosflash/eeprom generated firmware has all FF FF.
modified flasher firmware has all F0 23.
From 1D3610 - 1DFFFF
dosflash/eeprom generated firmware has all FF FF.
modified flasher firmware has mostly code with some 00 amongst it. (as firmware is from the official flasher, so probably a good thing that it has mostly code)
From 1E0000 - 1E01AF
Both different.
FINAL RESULT:
Anyway, even though there are some differences, I had absolutely zero issues with burning both DVD's and Blu-Ray discs with either firmware cross-flashing method.