ok i am curious if this is a different version than what i have. the playlist is playing out of order
BD rebuilder probbely took the wrong playlist then, haven't touched that program for years, but can see there is a playlist mantioned in your status window, if you can choose what playlist BD rebuilder should use, try the one from the status window
BD Rebuilder and CloneBD use the playlist mentioned by anydvd's disc.inf file (when needed). That would indicate the wrong playlist but @Pete will have to verify the playlist. It's possible to select a different playlist in BDRB but i don't know how that affects full disc backup routine.
Playlist 978 is the correct one, no doubt. But I'm assuming, you did a full disc copy and are playing back as a full Blu-ray disc with menus. In that case, the mentioned playlist may not get selected (that is for informational purposes only). Some additional fixing may be required, we'll look into it.