You can't with Clonedvd. I'll move your thread to the third party products section.
You might want to take a look at Shrink or Nero Recode.
How can I make a collection disc with scenes from different movies on one blank??
So I can use Any/Clone after all? Where are the scissors and how do I activate them? Can I choose to rip only the files I want w/Any, put them in a folder in the order I want them, add authoring for chapters at some point, then use Clone to finish up? And one more thing: how do I PM somebody in this forum??