James: First thank you for your assistance and patience.
In answer to your questions:
1.In the CloneBC selection screen, title 999 is checked as the main feature.
2.When I click the Preview player in the selection screen, all of the clips are played in order.
3.In the CloneBD target screen I choose the folder selection, no compression, original audio.
4.The summary screen also shows the clips in order, beginning with 506.
5.When I begin conversion, the processing screen preview player shows the program starts with clip 505 and the others out of order.
6. The same issue occurs when I create an ISO or MKV file.
7.Thoughts?